PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43896.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 165aa    MW: 18195.2 Da    PI: 6.5194
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43896.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB185.63.9e-5826121297
       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplk+yl+++re+egek
  KHN43896.1  26 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQRFREMEGEK 121
                 89********************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.9E-5523134IPR009072Histone-fold
SuperFamilySSF471131.96E-4128136IPR009072Histone-fold
PfamPF008083.9E-283195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.8E-215977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.8E-217896No hitNo description
PRINTSPR006156.8E-2197115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MAESDNDSGG AQNAGNSGNL SELSPREQDR FLPIANVSRI MKKALPANAK ISKDAKETVQ  60
ECVSEFISFI TGEASDKCQR EKRKTINGDD LLWAMTTLGF EEYVEPLKIY LQRFREMEGE  120
KTVAARDSSK DSASASSYHQ GHVYGSPAYH HQVPGPTYPA PGRPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B3e-4823116194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4823116194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0914940.0BT091494.1 Soybean clone JCVI-FLGm-8I21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236061.11e-122uncharacterized protein LOC100500556
SwissprotO233102e-74NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A0B2SAV81e-122A0A0B2SAV8_GLYSO; Nuclear transcription factor Y subunit B-3
TrEMBLA0A0R4J2T61e-122A0A0R4J2T6_SOYBN; Uncharacterized protein
STRINGGLYMA02G46970.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47640.19e-68nuclear factor Y, subunit B2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]